中国现代神经疾病杂志

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2 颈动脉粥样硬化性狭窄患者外周血miRNA-210-5P表达及其靶基因生物信息学分析

黄攀,徐敏,何晓英   

  1. 618000 四川省德阳市人民医院神经内科(黄攀);618000 四川省德阳市第二人民医院神经内科(徐敏); 646000 泸州,西南医科大学附属医院神经内科(何晓英)
  • 出版日期:2019-07-25 发布日期:2019-08-07
  • 通讯作者: 何晓英,Email:102050228@qq.com
  • 基金资助:
    四川省应用基础研究计划项目(项目编号:14JC0166);四川省卫生厅资助项目(项目编号:110368)

The expression of miRNA-210-5P and bioinformatics analysis of its predicted target genes in peripheral blood of patients with carotid artherosclerotic stenosis

HUANG Pan,XU Min,HE Xiao-ying   

  • Online:2019-07-25 Published:2019-08-07
  • Supported by:
    This study was supported by Sichuan Applied Basic Research Project (No. 14JC0166) and Sichuan Provincial Health Department Funded Project(No.110368).

摘要: 目的 通过检测颈动脉粥样硬化性狭窄患者外周血miRNA-210-5P相对表达量,分析 miRNA-210-5P及其靶基因功能。方法 选择2015年7月至2018年9月诊断明确的颈动脉粥样硬化性狭窄患者(CAS组,146例)作为观察对象,采用逆转录聚合酶链反应(RT-PCR)检测不同处理组受试者 外周血miRNA-210-5P相对表达量,并以TargetScan和CoMeTa数据库进行靶基因预测、DAVID数据库进行靶基因功能富集分析(GO分析)和KEGG信号通路分析。结果 与无颈动脉粥样硬化性狭窄患者或正常受试者(对照组,60例)相比,CAS组患者血清miRNA-210-5P相对表达量升高(t=14.759, P= 0.000)。其中,重度狭窄组(31例; q=23.028, P=0.000)、中度狭窄组(53例; q=6.657, P=0.000)、轻度狭窄组(62例; q=42.612, P=0.000)患者外周血miRNA-210-5P相对表达量均高于对照组;而中度狭窄组 (q=34.538, P=0.000)和重度狭窄组(q=11.914, P=0.000)miRNA-210-5P相对表达量高于轻度狭窄组; 重度狭窄组亦高于中度狭窄组(q=16.983, P=0.000)。ROC曲线显示,miRNA-210-5P预测颈动脉粥样硬化中至重度狭窄的曲线下面积为0.943,当最佳临界值为1.495时,其预测灵敏度90.33%、特异度 92.54%;生物信息学分析提示,miRNA-210-5P潜在靶基因包括 VEGFA、KCMF1、HMGCS1、KLF12、 EFNA3、GIT2等54个基因;GO分析显示,miRNA-210-5P靶基因功能主要富集于血管生成、神经元发育、 DNA转录因子活性的正性调控、内皮细胞趋化性、细胞迁移与分化黏附等;对KEGG信号通路的检测显 示,miRNA-210-5P靶基因主要富集于突触导向信号转导通路。结论 颈动脉粥样硬化性狭窄患者血清 miRNA-210-5P表达上调,且可能通过调控多种靶基因而作用于突触导向信号转导通路中,参与颈动脉粥样硬化性狭窄的发生与发展。

关键词: 颈动脉狭窄, 动脉粥样硬化, 微RNAs, 基因, 计算生物学

Abstract: Objective To investigate the relative expression of miRNA-210-5P in serum of patients with carotid atherosclerotic stenosis (CAS) and to explore the function of miRNA-210-5P and its target genes using bioinformatics methods. Methods We selected 146 patients with CAS from July 2015 to September 2018 in our hospital. Reverse transcriptase-polymerase chain reaction (RT-PCR) was used to detect the relative expression of miRNA-210-5P in peripheral blood of all enrolled patients. The target genes were predicted by using TargetScan and CoMeTa databases. The target genes of miRNA-210-5P were enriched by Gene Ontology (GO) using DAVID data and were performed with KEGG Pathway analysis. Results Compared with non-CAS patients or normal subjects (control group, N = 60), the relative expression of miRNA-210-5P in the serum of CAS group was significantly increased(t=14.759, P=0.000). The relative expressions of serum miRNA-210-5P in severe stenosis group(N=31; q=23.028, P=0.000), moderate stenosis group (N=53; q=6.657, P=0.000) and mild stenosis group (N=62; q=42.612, P= 0.000) were higher than that in control group. The relative expressions of serum miRNA-210-5P in moderate stenosis group (q =34.538, P =0.000) and severe stenosis group (q =11.914, P =0.000) were significantly higher than that in mild stenosis group. There lative expressions of serum miRNA-210-5P in severe stenosis group was significantly higher than thatin moderate stenosis group (q=16.983, P=0.000). Receive roperating characteristic (ROC) curve showed that the miRNA-210-5P predicted the area under the curve (AUC) of moderate to severe stenosis in CAS to be 0.943, the sensitivity was 90.33% and the specificity was 92.54% at the best cutoff value of 1.495. Bioinformatics analysis showed there were 54 potential target genes of miRNA-210-5P, such as VEGFA, KCMF1, HMGCS1, KLF12, EFNA3, GIT2, etc. GO analysis showed that the target genes of miRNA-210-5P were involved in angiogenesis, neuronal development, positive regulation of DNA transcription factor activity, endothelial cell chemotaxis, cell migration and differentiation and adhesion processes. KEGG Pathway analysis displayed miRNA-210-5P target genes were mainly enriched in synaptic-directed factor signal transduction pathways. Conclusions The expression of miRNA-210-5P inperipheral blood of CAS patients is upregulated,and it may participate in the process of CAS occurrence and development by regulating multiple target genes and acting on synaptic-directed signaling pathways.

Key words: Carotid stenosis, Atherosclerosis, MicroRNAs, Genes, Computational biology