基础医学与临床 ›› 2015, Vol. 35 ›› Issue (12): 1606-1611.

• 研究论文 • 上一篇    下一篇

EGFR敏感突变肺腺癌患者纵膈淋巴结转移相关基因的检测与分析

蓝保华1,兰卫华1,李钱2,张志敏2,何昊2,李梦侠1,杨镇洲1   

  1. 1. 重庆市第三军医大学大坪医院野战外科研究所
    2. 第三军医大学大坪医院 野战外科研究所
  • 收稿日期:2015-06-11 修回日期:2015-09-30 出版日期:2015-12-05 发布日期:2015-12-04
  • 通讯作者: 杨镇洲 E-mail:yangzz1970@163.com
  • 基金资助:
    APE1基因乙酰化修饰对肺癌细胞电离辐射效应的影响及其机制研究

Detection and analysis of mediastinal lymph node metastasis associated genes of lung adenocarcinoma in patients with EGFR sensitive mutations

  • Received:2015-06-11 Revised:2015-09-30 Online:2015-12-05 Published:2015-12-04

摘要: 目的 本研究采用转录组测序和生物信息学分析等方法,以期筛选出肺腺癌淋巴结转移相关基因。方法 分别检测伴和不伴纵膈淋巴结转移的EGFR敏感突变肺腺癌临床标本转录组表达谱,筛选出差异表达基因(DEGs);对这些DEGs进行相关生物信息分析,探索这些基因在淋巴结转移进程中可能发挥的作用。q-PCR法验证高表达基因在PC9细胞株(EGFR敏感突变细胞株)中的表达情况。结果 共检测了10例肺腺癌标本的转录组表达谱,通过差异基因表达分析筛选出169个DEGs,其中,68个在肺腺癌样本中表达上调、101个基因表达下调。q-PCR结果显示:高表达基因在PC-9细胞中,ZNF572、BRPF3、MMACHC等7个基因的表达量为中丰度, SMOC1、A1BG、BARX1等9个基因为低丰度,其余均为高丰度。结论 TFF3及DUSP6等多个差异表达基因可能涉及肺腺癌纵膈淋巴结转移进程。

关键词: 肺腺癌, 淋巴结转移, 转录组测序, 差异表达基因

Abstract: Objective: Using the transcriptome sequencing and bioimformatics methods to identify the mediastinal lymph node metastasis associated genes of lung adenocarcinoma. Methods: Using the transcriptome sequencing method, we detected 10 cases of lung adenocarcinoma samples with EGFR sensitive mutation. Comparing the two groups of the transcriptome expression profiles, Differentially expressed genes (DEGs) were analyzed, bioimformatics methods were used to analyze the role of these genes. q-PCR detected the expression of the upregurated genes in PC-9 cell lines (EGFR sensitive mutation cell lines) . Results: There were 68 DEGS up-regulated and 101 genes down-regulated in the lung adenocarcinoma samples. q-PCR showed that the aboundance of 7 genes(ZNF572,BRPF3,MMACHC and so on.) in upregurated genes was low, nine genes(SMOC1,A1BG,BARX1 and so on.) was moderate, and others was high. Conclusion: TFF3, DUSP6 and other DEGs may be involved in the process of mediastinal lymph node metastasis in lung adenocarcinoma.

Key words: lung adenocarcinoma, lymph node metastasis, transcriptome sequencing, differentially expressed genes

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