基础医学与临床 ›› 2016, Vol. 36 ›› Issue (7): 962-968.

• 研究论文 • 上一篇    下一篇

nPTB基因座上T-uc.33在小鼠神经系统发育中的功能

朱丽媛1,赵阿妮2,张靖3,侯琳1,阴彬1,彭小忠3   

  1. 1. 中国医学科学院基础医学研究所
    2. 中国医学科学院基础医学研究所 北京协和医学院基础学院
    3. 中国医学科学院基础医学研究所&北京协和医学院 基础学院 生物化学与分子生物学
  • 收稿日期:2016-05-26 修回日期:2016-05-30 出版日期:2016-07-05 发布日期:2016-06-22
  • 通讯作者: 彭小忠 E-mail:peng_xiaozhong@163.com
  • 基金资助:
    国家自然科学基金

T-uc.33 located in the genomic loci of nPTB may function in the neural development

  • Received:2016-05-26 Revised:2016-05-30 Online:2016-07-05 Published:2016-06-22
  • Contact: Xiao-zhong PENG E-mail:peng_xiaozhong@163.com

摘要: 目的 nPTB基因座上T-uc.33这一超保守长非编码RNA的鉴定及其在小鼠神经系统发育过程中的功能。方法 利用生物信息学方法和实验对现存的481个超保守区域(UCRs)进行数据挖掘和检测,筛选到nPTB基因座上存在的UCR,即T-uc.33,并用RACE扩增T-uc.33的RNA转录本全长;用实时荧光定量PCR检测T-uc.33和nPTB在小鼠脑组织发育及神经干细胞分化不同时间点的表达谱;用siRNAs转染细胞法检测T-uc.33对nPTB所起的调控作用。结果 筛选并鉴定了nPTB基因座上的T-uc.33为真实转录的超保守长非编码RNA,全长为807 nt;T-uc.33和nPTB在小鼠脑组织中的表达呈显著正相关(p<0.01),并随着脑组织发育从胚胎到成年期呈现先升高后降低的趋势,在体外神经干细胞分化过程也存在差异表达;敲低T-uc.33可显著降低nPTB的表达(p<0.01)。结论 T-uc.33为nPTB基因座上的超保守长非编码RNA,对nPTB起到正向调控作用,潜在地影响小鼠脑组织发育和神经干细胞的分化过程。

关键词: 关键词:超保守区域, nPTB, 神经发育, 长非编码RNA

Abstract: Objective Identification of T-uc.33, which is an ultra-conserved lncRNA locates in the genomic loci of nPTB, and exploration of its function during the neural development in mouse. Method Bioinformatics analysis was used to operate the data mining of 481 ultra-conserved regions (UCRs) and identified the T-uc.33 which located in the genomic loci of nPTB using experimental test; RACE was used to obtain the full length of T-uc.33; quantitative real-time PCR was performed to observe the expression pattern of T-uc.33 and nPTB during the developmental stages of mouse brain as well as the differentiation process of neural stem cell; Loss-of-function strategy was used to study the regulatory role of T-uc.33. Results A bona fide ultra-conserved lncRNA named T-uc.33 whose length was 807nt was screened and identified. The expression level of T-uc.33 was significantly positively correlated with nPTB and both of them shared the similar expression pattern during mouse brain development or the differentiation of NSC. Knocking down the expression of T-uc.33 could decrease the abundance of nPTB. Conclusion T-uc.33 is the ultra-conserved lncRNA which locates the genomic loci of nPTB and positively regulates the expression of it. T-uc.33 potentially plays the important role in mouse brain development and NSC differentiation.

Key words: Key words: Ultra-Conserved Regions (UCRs), nPTB, neural development, long non-coding RNAs (lncRNAs)

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