Prediction of Molecular Mechanism of Shengjie Tongyu Decoction in the Treatment of Chronic Heart Failure Based on Network Pharmacology and Molecular Docking Technology
SUN Zi-yi1, HUANG Li2, LIAO Jiang-quan2, CUI Gang2, SHI Zai-xiang2, WANG Zi-han1, TAO Shi-yi1, LI Chun-yan2*
1. Beijing University of Traditional Chinese Medicine, Beijing 100029, China; 2. China-Japan Friendship Hospital, Beijing 100029, China
Abstract:OBJECTIVE To explore the potential molecular mechanism of Shengjie Tongyu decoction in the treatment of chronic heart failure (CHF) by network pharmacology combined with molecular docking technique. METHODS The effective chemical constituents and their corresponding targets of Shengjie Tongyu decoction were screened from TCMSP database and DrugBank database. The related targets of chronic heart failure were screened by GeneCard, OMIM, TTD and DisGeNet databases. The "active components-targets-disease network" was constructed by Cytoscape3.7.2 software. The protein interaction network of candidate targets was constructed by STRING database, and the protein interaction network was clustered by MEODE software. The core modules obtained by clustering were enriched by GO and KEGG. Finally, the key targets and active components were verified by molecular docking with AutoDockVina software. RESULTS Seventy-five active components and 109 genes were screened out as the potential active components and potential targets of Shengjie Tongyu decoction in the treatment of CHF; the main active components were quercetin, luteolin, kaempferol, anhydroicaritin, isorhamnetin, formononetin and other flavonoids; IL-6, MAPK1, MAPK8, AKT1, VEGFA, JUN were the core targets. Molecular docking showed that the key components were well docked with the target,;GO enrichment analysis showed that Shengjie Tongyu decoction could play a role by participating in many biological pathways, including angiogenesis, regulation of endothelial cell proliferation, binding of cytokine receptors, negative regulation of apoptosis signal pathway, regulation of nitric oxide synthase activity and active oxygen metabolism. The key pathways are mainly concentrated in Toll-like receptor signal pathway, Nod-like receptor signal pathway, MAPK signal pathway, mTOR signal pathway, jak-STAT signal pathway, VEGF signal pathway and so on. CONCLUSION This study reveals that Shengjie Tongyu decoction in the treatment of chronic heart failure may be related to its regulation of immune inflammatory response, cell proliferation and apoptosis, angiogenesis and oxidative stress and other biological processes. it provides a theoretical basis and research direction for further study of its mechanism.
孙梓宜, 黄力, 廖江铨, 崔刚, 史载祥, 王子涵, 陶诗怡, 李春岩. 基于网络药理学和分子对接技术预测升解通瘀汤治疗慢性心衰的分子机制[J]. 中国药学杂志, 2021, 56(18): 1486-1495.
SUN Zi-yi, HUANG Li, LIAO Jiang-quan, CUI Gang, SHI Zai-xiang, WANG Zi-han, TAO Shi-yi, LI Chun-yan. Prediction of Molecular Mechanism of Shengjie Tongyu Decoction in the Treatment of Chronic Heart Failure Based on Network Pharmacology and Molecular Docking Technology. Chinese Pharmaceutical Journal, 2021, 56(18): 1486-1495.
HU S S, GAO R L, LIU L S, et al. Summary of the 2018 Report on Cardiovascular Diseases in China [J]. Chin Circul J(中国循环杂志), 2019, 34(3):209-220.
[2]
YU Y C, JIANG L D, SHI Z X. Effect of Shengjie Tongyu Tang on heart function of rat with ischemia-reperfusion injury [J]. J Emerg Tradit Chin Med (中国中医急症), 2008, 17(3):354-356.
[3]
YU Y C, SHI Z X, JIANG L D. Myocardial protective effect of Shengjie Tongyu Tang on ischemia-reperfusion injury in rats [J]. Shaanxi J Tradit Chin Med(陕西中医), 2008, 29(6):747-749.
[4]
YUAN G Z. Clinical study of modified Sheng Xian Qu yu decoction in the treatment of chronic heart failure with qi collapse and blood stasis [D]. Beijing:Chin Acad Tradit Chin Med, 2019.
[5]
LI Y W, LIU Z Q, ZHAO Y, et al. Network analysis of main ingredients-target-pathway of Xiangdan injection in treatment of coronary heart disease [J]. Chin Pharm J (中国药学杂志), 2018, 53(22):1927-1935.
[6]
SHANNON P, MARKIEL A, OZIER O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks[J]. Genome Res, 2003, 13(11): 2498-2504.
[7]
SZKLARCZYK D, GABLE A L, LYON D, et al. STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets[J]. Nucleic Acids Res, 2019, 47(D1): 607-613.
[8]
CHIN C H, CHEN S H, WU H H, et al. cytoHubba: identifying hub objects and sub-networks from complex interactome[J]. BMC Syst Biol, 2014, 8(Suppl 4): 1-7.
[9]
BADER G D, HOGUE C W. An automated method for finding molecular complexes in large protein interaction networks[J]. BMC Bioinformatics, 2003, 4(2):1-27.
[10]
TROTT O, OLSON A J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading[J]. J Comput Chem, 2010, 31(2): 455-461.
[11]
XU S N, ZHUANG L, ZHAI Y Y, et al. Material basis and mechanism of Erzhi Pill for preventing osteoporosis based on network pharmacology [J]. Chin Pharm J (中国药学杂志), 2018, 53(22): 1913-1920.
[12]
PATEL R V, MISTRY B M, SHINDE S K, et al. Therapeutic potential of quercetin as a cardiovascular agent[J]. Eur J Med Chem, 2018, 155(8): 889-904.
[13]
FERENCZYOVA K, KALOCAYOVA B, BARTEKOVA M. Potential implications of quercetin and its derivatives in cardioprotection[J]. Int J Mol Sci, 2020, 21(5):1-24.
[14]
LUO Y, SHANG P, LI D. Luteolin: A flavonoid that has multiple cardio-protective effects and its molecular mechanisms[J]. Front Pharmacol, 2017, 8(11):1-10.
[15]
HU W, XU T, WU P, et al. Luteolin improves cardiac dysfunction in heart failure rats by regulating sarcoplasmic reticulum Ca(2+)-ATPase 2a[J]. Sci Rep, 2017, 7(1):1-16.
[16]
HU J, MAN W, SHEN M, et al. Luteolin alleviates post-infarction cardiac dysfunction by up-regulating autophagy through Mst1 inhibition[J]. J Cell Mol Med, 2016, 20(1): 147-156.
[17]
NAKAYAMA A, MORITA H, NAKAO T, et al. A food-derived flavonoid luteolin protects against angiotensin Ⅱ-induced cardiac remodeling[J]. PLoS One, 2015, 10(9): e0137106.
[18]
DU Y, HAN J, Z H, et al. Kaempferol prevents against ang Ⅱ-induced cardiac remodeling through attenuating ang Ⅱ-induced inflammation and oxidative stress[J]. J Cardiovasc Pharmacol, 2019, 74(4): 326-335.
[19]
BOBE G, ALBERT P S, SANSBURY L B, et al. Interleukin-6 as a potential indicator for prevention of high-risk adenoma recurrence by dietary flavonols in the polyp prevention trial[J]. Cancer Prev Res (Phila), 2010, 3(6): 764-75.
[20]
GAO L, YAO R, LIU Y, et al. Isorhamnetin protects against cardiac hypertrophy through blocking PI3K-AKT pathway[J]. Mol Cell Biochem, 2017, 429(1-2): 167-177.
[21]
CHEN M, CHENG W, SHI Z, et al. Shengjie Tongyu Granule Inhibits Vascular Remodeling in ApoE-Gene-Knockout Mice[J]. Evid Based Complement Alternat Med, 2012, 8(7):1-13.
[22]
PAN G M, CUI J Y, YAO G Z, et al. Curative effect analysis on the treatment of refractory angina pectoris of blood stasis type by Shengjietongyutang granule [J]. J Tropical Med(热带医学杂志), 2018, 18(6): 761-765.
[23]
YE W, TANG X, YANG Z, et al. Plasma-derived exosomes contribute to inflammation via the TLR9-NF-κB pathway in chronic heart failure patients[J]. Mol Immunol, 2017, 87(8): 114-121.
[24]
YUAN L, DAI X, FU H, et al. Vaspin protects rats against myocardial ischemia/reperfusion injury (MIRI) through the TLR4/NF-κB signaling pathway[J]. Eur J Pharmacol, 2018, 835(10): 132-139.
[25]
GUO X, JIANG H, YANG J, et al. Radioprotective 105 kDa protein attenuates ischemia/reperfusion-induced myocardial apoptosis and autophagy by inhibiting the activation of the TLR4/NF-κB signaling pathway in rats[J]. Int J Mol Med, 2016, 38(3): 885-893.
[26]
DONG L Y, CHEN F, XU M, et al. Quercetin attenuates myocardial ischemia-reperfusion injury via downregulation of the HMGB1-TLR4-NF-κB signaling pathway[J]. Am J Transl Res, 2018, 10(5): 1273-1283.
[27]
MANN D L. The emerging role of innate immunity in the heart and vascular system: for whom the cell tolls[J]. Circ Res, 2011, 108(9): 1133-1145.
[28]
STROBER W, MURRAY P J, KITANI A, et al. Signalling pathways and molecular interactions of NOD1 and NOD2[J]. Nat Rev Immunol, 2006, 6(1): 9-20.
[29]
WATANABE T, KITANI A, MURRAY P J, et al. Nucleotide binding oligomerization domain 2 deficiency leads to dysregulated TLR2 signaling and induction of antigen-specific colitis[J]. Immunity, 2006, 25(3): 473-485.
[30]
HIGASHIKUNIL Y, TANAKA K, KATO M, et al. Toll-like receptor-2 mediates adaptive cardiac hypertrophy in response to pressure overload through interleukin-1β upregulation via nuclear factor κB activation[J]. J Am Heart Assoc, 2013, 2(6): e000267.
[31]
PAPAKRIVOPOUOU J, LINDAHL G E, BISHOP J E, et al. Differential roles of extracellular signal-regulated kinase 1/2 and p38MAPK in mechanical load-induced procollagen alpha1(I) gene expression in cardiac fibroblasts[J]. Cardiovasc Res, 2004, 61(4): 736-744.
[32]
MA X L, KUMAR S, GAO F, et al. Inhibition of p38 mitogen-activated protein kinase decreases cardiomyocyte apoptosis and improves cardiac function after myocardial ischemia and reperfusion[J]. Circulation, 1999, 99(13): 1685-1691.
[33]
RITSCHEL V N, SELJEFLOT I, ARNESEN H, et al. IL-6 signalling in patients with acute ST-elevation myocardial infarction[J]. Results Immunol, 2014, 4(12): 8-13.
[34]
SMART N, MOJET M H, LATCHMAN D S, et al. IL-6 induces PI 3-kinase and nitric oxide-dependent protection and preserves mitochondrial function in cardiomyocytes[J]. Cardiovasc Res, 2006, 69(1): 164-177.
[35]
MA S K, CHOI J S, JOO S Y, et al. Activation of the Renal PI3K/Akt/mTOR Signaling Pathway in a DOCA-Salt Model of Hypertension[J]. Chonnam Med J, 2012, 48(3): 150-154.
[36]
VYAS A K, HOANG V, PADMANABHAN V, et al. Prenatal programming: adverse cardiac programming by gestational testosterone excess[J]. Sci Rep, 2016, 6(7):1-11.
[37]
TAIMEH Z, LOUGHRAN J, BIRKS E J, et al. Vascular endothelial growth factor in heart failure[J]. Nat Rev Cardiol, 2013, 10(9): 519-530.
[38]
OKA T, AKAZAWA H, NAITO A T, et al. Angiogenesis and cardiac hypertrophy: maintenance of cardiac function and causative roles in heart failure[J]. Circ Res, 2014, 114(3): 565-571.
[39]
MORINE K J, PARUCHURI V, QIAO X, et al. Circulating multimarker profile of patients with symptomatic heart failure supports enhanced fibrotic degradation and decreased angiogenesis[J]. Biomarkers, 2016, 21(1): 91-97.
[40]
KUCUKARDALI Y, AYDOGDU S, OZMEN N, et al. The relationship between severity of coronary artery disease and plasma level of vascular endothelial growth factor[J]. Cardiovasc Revasc Med, 2008, 9(2): 66-70.
[41]
WANG Y, HUANG Q, LIU J, et al. Vascular endothelial growth factor A polymorphisms are associated with increased risk of coronary heart disease: a meta-analysis[J]. Oncotarget, 2017, 8(18): 30539-30551.
[42]
YAN P, SUN C, MA J, et al. MicroRNA-128 confers protection against cardiac microvascular endothelial cell injury in coronary heart disease via negative regulation of IRS1[J]. J Cell Physiol, 2019, 234(8): 13452-13463.