Molecular Identification of Polygonum chinensis Using DNA Barcoding
HOU Dian-yun1,2, YANG Meng-meng1,2, LI Jiong3,MA Zhan-qiang1, ZHOU Shuang1,2, ZHAO Xing-li1,2,XU Hua-wei1,2, ZHANG Gai-na1
1. College of Agriculture, Henan University of Science and Technology, Luoyang 471023, China; 2. The Luoyang Engineering Research Center of Breeding and Utilization of Dao-di Herbs, Luoyang 471023, China; 3. Chinese Medicinal Materials Production Technology Service Center of Department of Agriculture of Henan Province, Zhengzhou 450000,China
Abstract��OBJECTIVE To identify Polygonum chinensis and its adulterants by ITS2 sequences. METHODS Total genomic DNA of P. chinensis was extracted using the plant genomic DNA kit. The internal transcribed spacer 2(ITS2) regions were amplified. The variable site of ITS2 regions were analysed through MEGA 6.0 software. The intra-versus inter-specific genetic distances of the ITS2 regions was calculated based on the kimura 2-parameter(K2P) model. Neighbor-Joining phylogenetic trees were constructed using MEGA6.0. RESULTS The intraspecific variation of P. chinensis was small. However, the interspecific variation of P. chinensis and its adulterants was small distinct. The secondary structure of ITS2 of P. chinensis and its adulterants has significant difference. NJ trees can identify P. chinensis and its adulterants. CONCLUSION ITS2 Regions can be used to authenticate P. chinensis and its adulterants which provide new METHODS for the identification of P. chinensis. The standard DNA barcodes of P. chinensis are establishment which would lay the foundation of identification and safety clinical drug application of P. chinensis.
GUANG DONG ZHONG YAO ZHI BODRD. Guang Dong Zhong Yao Zhi(Volume 1)(�㶫��ҩ־) [M]. Guangzhou: Guangdong Science and Technology Press, 1990.
[2]
DENG S M. Hainan List of Commonly Used Chinese Herbal Medicine(���ϳ����в�ҩ��¼)[M]. Beijing: Science and Technology of China Press,2006:138.
[3]
EZHILAN B P, NEELAMEGAM R. GC-MS Analysis of phytocomponents in the ethanol extract of Polygonum chinense L[J]. Pharmacognosy Res, 2012, 4(1):11-14.
[4]
YE Q M.Preliminary study on the chemical components and quality standards of Polygonum chinense[D].Guangzhou: Jinan University,2011.
[5]
RAO P R S P, RAO E V. Polyphenolic components of Polygonum chinense leaves[J]. Current Sci, 1977,46(18): 640.
[6]
YANG H X,LIANG Z Y,DENG S M. Analysis of the volatile components of Polygonum chinense[J]. Lishizhen Med Mater Med Res(ʱ���ҽ��ҩ),2009, 20(2):285-286.
[7]
TRAN T T, KIM M, JANG Y, et al. Characterization and mechanisms of anti-influenza virus metabolites isolated from the vietnamese medicinal plant Polygonum chinense[J]. BMC Complem Altern M, 2017, 17(1):162.
[8]
XIAO H T, TSANG S W, QIN H Y, et al. A bioactivity-guided study on the anti-diarrheal activity of Polygonum chinense Linn[J]. J Ethnopharmacol, 2013,149(2):499-505.
[9]
ISMAIL I F, GOLBABAPOUR S, HASSANDARVISH P, et al. Gastroprotective activity of Polygonum chinense aqueous leaf extract on ethanol-induced hemorrhagic mucosal lesions in rats[J]. Evid-Based Compl Alt Med, 2012,2012(1):1-9.
[10]
MEI Q X.Guangdong Real Estate Medicine Research(�㶫�ز�ҩ���о�)[M]. Guang zhou:Science and Technology of Guangzhou Province,2011:258-259.
[11]
LIN J M,WANG Y X,YIN C, et al. Analysis of supercritical CO2 extraction GC-MS of analysis[J]. J Chin Med Mater(��ҩ��),2001,24(6):417.
[12]
HUANG W Y, CAI Y Z, XING J, et al. Comparative analysis of bioactivities of four Polygonum species[J]. Planta Med, 2008,74(1):43-49.
[13]
CAI J J,ZENG C Y,MEI Q X. Effects of aqueous extract from Polygonum chinense L. on anti-pyrexia,anti-inflammation and abirritation[J]. Lishizhen Med Mater Med Res(ʱ���ҽ��ҩ),2017, 28(1):100-102.
[14]
GUO M, LI L Y,CHEN J. Identification characters of leaf morphological and venation patter of Polygonum chinense and Polygonum chinense Var.hispidum[J]. Northern Horticulture(������),2014,38(3):144-146.
[15]
ZHANG K F, GAO Y. Macroscopic and UV-Vis spectrum identification research on Polygonum chinense[J]. J Anhui Agri Sci(����ũҵ��ѧ),2012,40(3): 1412-1414.
[16]
WANG J X. Study on HPLC-fingerprint of Polygonum chinense L.[J]. Chin J Exp Tradit Med Form(�й�ʵ�鷽��ѧ��־),2011,17(15):96-98.
[17]
CHENG J G,HOU L L,YAN Y X. Study on identification methods of the Polygonum chinensis L. of thin-layer chromatography[J]. China Animal Health(�й����ﱣ��),2015,17(5):63-65.
[18]
CHEN S L. Molecular Identification of Chinese Materia Medica Using DNA Barcodes(��ҩDNA��������Ӽ���)[M]. Beijing:People's Medical Publishing House, 2012:4.
[19]
HEBERT P D N,RATNASINGHAM S,DEWAARD J R. Barcoding animal life: cytochrome c oxidase subunit I divergences among closely related species[J]. Proc Biol Sci,2003,270(S1):96-99.
[20]
LI D Z, LIU J Q, CHEN Z D, et al. Plant DNA barcoding in China [J]. J Syst Evol, 2011, 49(3):165-168.
[21]
CHEN S L, YAO H, HAN J P, et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species [J]. PLoS One, 2010, 5(1):e8613.
[22]
YAO H, SONG J Y, LIU C, et al. Use of ITS2 region as the universal DNA barcode for plants and animals[J]. PLoS One, 2010,5(10): e13102.
[23]
SONG J Y, SHI L C, LI D Z, et al. Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA[J]. PLoS One, 2012, 7(8):e43971.
[24]
HOU D Y, ZHOU H, SONG J Y. Molecular identification of dalbergiae odoriferae lignum and its adulterants using the ITS2 sequence[J]. Chin Pharm J(�й�ҩѧ��־), 2015,50(15):1273-1276.
[25]
HOU D Y, SONG J Y, YANG P, et al. Application study of ITS/ITS2 barcodes in identification of zanthoxmli pericarpium[J]. Chin Pharm J(�й�ҩѧ��־),2014,49(7):534-538.
[26]
GHOSH J S, BHATTACHARYA S, PAL A. Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer(ITS1 and 2) sequences and their consensus secondary structure[J]. Genetica, 2017, 145(3):319-333.
[27]
XIONG C, HU Z G, TU Y, et al. ITS2 Barcoding DNA region combined with high resolution melting(HRM) analysis of Hyoscyami Semen, the mature seed of Hyoscyamus niger[J]. Chin J Nat Med, 2016, 14(12):898-903.
[28]
YE F, LIU S Y, HU P, et al. Intraspecific discrimination of paris polyphylla in Wudang mountain area based on ITS2[J]. Chin Tradit Herb Drugs(�в�ҩ), 2017,48(3):550-558.
[29]
WANG J, LIU X, SUN W, et al. DNA Barcodes identification of one rare traditional Chinese medicine draconis sanguis[J]. Chin Pharm J(�й�ҩѧ��־),2015, 50(15):1261-1265.
[30]
CHEN S L, SONG J Y,YAO H, et al. Strategy and key technique of identification of Chinese herbal medicine using DNA barcoding[J]. Chin Pharm J(�й�ҩѧ��־),2009, 44(5):322-327.
[31]
CHEN S L,YAO H,HAN J P,et al. Principles for molecular identification of traditional Chinese materia medica using DNA barcoding[J]. China J Chin Mater Med (�й���ҩ��־),2013,38(2):141-148.
[32]
KOETSCHAN C, FÖRSTER F, KELLER A, et al. The ITS2 database ��-sequences and structures for phylogeny[J]. Nucleic Acids Res, 2010,38:D275-D279.
[33]
SCHULTZ J, MAISEL S, GERLACH D, et al. A common core of secondary structure of the internal transcribed spacer 2(ITS2) throughout the Eukaryota[J]. RNA, 2005,11(4):361-364.
[34]
TAMURA K, PETERSON D, PETERSON N, et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods[J]. Mol Bio Evo, 2011, 28(10):2731-2739.
[35]
ROSS H A, MURUGAN S, LI W L. Testing the reliability of genetic methods of species identification via simulation [J]. Syst Biol, 2008, 57(2):216-230.
[36]
LIN Z Y, LI S Y, ZHANG G. Pharmacognosy study of Polygonum chinensis[J]. J Mod Food Pharm(�ִ�ʳƷ��ҩƷ��־),2006, 16(4):15-16.
[37]
LIU M Z,SONG J Y,LUO K, et al. Identification of nine common medicinal plants from Artemisia L. by DNA barcoding sequences [J]. Chin Tradit Herb Drugs(�в�ҩ),2012,43(7):1393-1396.